Loading software

On this platform, software are contained in their own environment. We provide numerous software environments for quick, easy and reproducible result. Those environements are mainly based on Conda and Apptainer.

How to use software ?

To activate any environement, we recommand using the already installed Environment Modules.

Base Syntax

Usually, environments are named after the software that they implement. For example an environment for the software mmseqs2 will be named mmseqs2.

List the available software:

module avail

or for all version of a specific sotware:

module avail wanted_software

Load a software:

module load mmseqs2/14.7e284

Unload a software:

module unload mmseqs2/14.7e284

Software stacking:

Environments can be stacked if you need several softwares at once.

module load software1
module load software2

Software stacking should be used wisely, incompatibilities could appear. It's recommanded to load the software just before using it.

Unload all loaded software:

module purge

Other ressource

If you're like me and want to see the environment file, you can find it on the IFB's gitlab.